About the drawing of structure formulae in Chemistry :
Have problems drawing the dot and cross diagrams of HNO3,H2SO4
and HSO4-. Can someone please teach me how to do so? Anyway is the
Dot and Cross diagram of I3- that of the left and right I having 8
electrons and the centre I having10 electrons?
To be honest, the best (ie. fastest and most effective and
clearest) way to learn the correct way of drawing structural
formulae (eg. Kekule, Lewis, dot-&-cross, etc) is to
attend my tuition (it's very difficult to teach certain aspects of
Chemistry, such as drawing structures, over the internet). My
tuition students can draw structures much better than their JC
peers who do not have the benefit of my tuition, because this is
one area (out of many) that JC teachers do not teach well at all.
(As an ex-MOE teacher, I can empathize and sympathize, and don't
blame the JC teachers, it's simply the fault of the system,
with all its constraints and problems.)
Always draw Kekule structures first, then translate into
dot-&-cross if the exam question requires one. Normal covalent
bonds are a dot-cross, while dative bonds are a dot-dot or a
cross-cross.
If you have difficulty drawing conjugate acids, simply draw the
conjugate bases first, then add the protons one by one. For
instance, draw the conjugate base sulfate(VI) ion, SO4 2-,
then protonate once to obtain HSO4 -, and protonate again to obtain
H2SO4.
Protonating an negatively (formal) charged O- atom, means
to use one of its lone pairs to become a bond pair with the
proton. In dot-cross-terminology, in the conjugate base one of the
lone pairs is a dot-cross (while the other 2 lone pairs are
dot-dot), and in the conjugate acid the bond pair is a
dot-cross.
So to draw nitric(V) acid HNO3, first draw nitrate(V)
ion NO3 -.
Begin by drawing an N aton in the center, singly bonded to 3 O
atoms around it.
Since the ionic charge is uninegative, you expect a uninegative
formal charge on one of the O atoms.
Which means that O atom with the uninegative formal charge has 3
lone pairs and 1 bond pair, while the other 2 O atoms have 2 lone
pairs and 2 bond pairs.
But that violates N's octet (which is in Period 2 and cannot
expand its octet).
Hence shift one pi bond to become a lone pair on the O
atom.
This gives you 2 singly bonded O atoms with a uninegative formal
charge, and an N atom with a unipositive formal charge (since it
now has 4 bond pairs and no lone pairs, and it is in Group V).
Check that your uninegative ionic charge is the sum of formal
charges (and it is also the sum of oxidation states, but we'll
talk about that another time... during tuition).
How do you account for the separation of unipositive and
uninegative formal charges? One of the N-O bonds must obviously be
dative in nature.
But what about the other N-O bond where the O also has a
uninegative formal charge? Is that also dative?
If it were also that, then the formal charge on the N atom
would be dipositive, not unipositive. But since its formal charge
is unipositive (a Group V atom having 4 bond pairs and 0
lone pairs), hence we deduce only one of the N-O bonds is
dative.
Then how do you account for the remaining uninegative formal
charged O- atom? Bear in mind that this entire structure
is of a conjugate base, and therefore it follows that the
uninegative formal charge on the remaining singly bonded O atom
arose from the loss of a proton (ie. HNO3 ---> H+ + NO3 -).
The electron and molecular/ionic geometries of the NO3-/HNO3
species, are both trigonal planar (electron geometry =
molecular/ionic geometry since there are no lone pairs on the
central atom).
The sulfate(VI) ion, SO4 2- is simpler.
Begin by drawing an S atom in the center, followed by 4 O atoms
around. Since the ionic charge is dinegative, you expect two
of the O atoms to be uninegative and singly bonded, having 3 lone
pairs and 1 bond pair. The remaining two doubly bonded O atoms
thus have 2 lone pairs each, and no formal charge.
Notice that the S atom has expanded its octet (it's allowed to
do so, being in Period 3, it has energetically accessible vacant 3d
orbitals to use), and it has no formal charge (a Group VI atom
having 6 bond pairs and 0 lone pairs), which is consistent with the
fact that the ionic charge is dinegative.
As for the triiodide ion, notice that the I- nucleophile (having
a uninegative formal or ionic charge, thus being electron
rich) is capable of inducing (due to inter-electron
repulsion) a temporary dipole in the non-polar I2 molecule,
making it electrophilic. The nucleophile then attacks (ie. sends
out a lone pair to become a dative bond pair) the partially
positively charged (ie. delta +ve) I atom in the I2 molecule.
Hence in the triiodide ion, I3 -, the dative bond is from a
terminal I atom to the central I atom, and the uninegative formal
charge (for the uninegative ionic charge) rests on the central I
atom which is the dative bond acceptor or recipient : a Group
VII atom having 3 lone pairs and 2 bond pairs, has 8 valence
electrons thus having a uninegative formal charge (note : in
terms of an expanded octet it has 10 valence electrons).
The oxidation state (OS) of the uninegatively formal charged
central I atom is (Oxidation State = formal charge +
electronegativity considerations) -1 + 0 = -1. The other two
(terminal) I atoms each has an OS of 0.
Ionic charge = sum of formal charges = 0 + -1 + 0 = 1-
Ionic charge = sum of OS = 0 + -1 + 0 = 1-
(Note :
In organic chemistry presentation, show a curved arrow from a
lone pair on the I- nucleophile becoming a bond pair with the
delta +ve I atom of the I2 molecule.
In physical/inorganic chemistry presentation, you can either
show formal charges before, or after, dative bond formation. Some
JC teachers and authors (including 'A' level study guide
author CS Toh) favour the former, while other JC teachers and
authors (including myself) favor the latter, which honestly
makes more sense. Some JC teachers and authors even
insist you show *the same* lone pair next to *the
same* dative bond, which reveals a confusion between organic
chemistry and physical/inorganic chemistry presentation : it is
either a lone pair (ie. before) or a dative bond (ie. after), but
you should *not* show it existing in two forms at the same time;
unless you're intending to use a curved arrow, not a straight
arrow, to represent the mechanism for the formation of its
dative bond, which is generally used in organic chemistry, rather
than the structure after the dative bond is formed, which is
generally used in physical/inorganic chemistry).
Since the central I atom in the triiodide ion has 3 lone pairs
and 2 bond pairs, hence it's electron geometry is trigonal
bipyramidal, and consequently its ionic geometry is linear
(unlike octahedral electron geometry, lone pairs in trigonal
bipyramidal electron geometries preferentially occupy the
equatorial, not axial, positions).
You'll probably want to google out these structures after you've
drawn them, to double check. In addition to Google and Wikipedia
(which provide lots more useful info on any chemical species other
than just its structure), you can also check a species' structure
using the Chemical Search Engine :
http://www.chemindustry.com/apps/chemicals?
I'll leave you with two awesomely exciting
draw-the-structure challenge questions :
Without cheating and googling/wikipeding/searching out its
structure on the internet, attempt to deduce and elucidate the
structure (eg. Kekule, Lewis, dot-&-cross, etc) of :
i) the nitrogen dioxide molecule, and
ii) the dipyridineiodine(I) cation (eg. in dipyridineiodine(I)
nitrate(V), of which I've earlier already shown you
how to draw the nitrate(V) ion).
In case you didn't already know :
The pyridine molecule is a benzene ring in which one of the
(C-H) of the ring has been replaced by an N: (with a lone pair). So
the di in dipyridine means two such pyridines, connected to each
other via the iodine (BenzeneN-I-NBenzene). Hence this is called
the dipyridineiodine(I) ion.
--------------------------------------
Solution for dipyridineiodine(I) cation :
Regarding the structure of dipyridineiodine(I) cation; first
notice that this is a cation, so an electron has been lost from the
species, and from the aromatic nature of pyridine, you would be
able to correctly deduce that the electron has been lost from
iodine.
Because nitrogen does not have empty d orbitals to expand its
octet, in order to preserve aromaticity, pyridine would act as a
nucleophile attacking the I+ ion (because the lone pair on N is not
delocalized into the benzene ring, it's a strong nucleophile and
base). Hence the dipyridineiodine(I) species would see the iodine
atom having two bond pairs, one with each pyridine.
So each N atom would have a postive formal charge (having
donated its lone pair for dative bonding), and the iodine atom,
having 3 lone pairs (recall that it has lost an electron) and 2
bond pairs, giving the iodine atom a negative formal charge.
Overall ionic charge = sum of formal charges = (+1) + (+1) +
(-1) = +1 cationic charge.
Oxidation State (O.S.) of iodine = formal charge +
electronegativity consideration = (-1) + (+1) + (+1) (because the
iodine has 2 covalent bond pairs with more electronegative nitrogen
atoms) = +1
Because the O.S. of iodine in dipyridineiodine(I) cation is +1,
hence the stock name dipyridineiodine(I).
Check that in your structure of the dipyridine(I) ion,
each of the N atoms has
(i) a formal charge of +1 (4 valence electrons (close to nucleus)
on a Grp V element; donated to form a dative bond in a nucleophilic
attack)
(ii) an oxidation state of -3 (ie. (+1) + 4(-1) ; N is more
electronegative compared to I and C)
(iii) a stable octet (4 bond pairs = 8 valence electrons (in
total)).
The I atom has
(i) a formal charge of -1 (8 valence electrons (close to nucleus)
on a Grp VII element; initially lost an electron but subsequently
accepted 2 electrons in the form of 2 dative bonds)
(ii) an oxidation state of +1 (ie. (-1) + 2(+1) ; N is more
electronegative compared to I)
(iii) expanded its octet (2 bond pairs + 3 lone pairs = 10 valence
electrons (in total). Iodine is in period 5 and can expand its
octet by accepting electrons into its empty 5d orbitals /
subshell).
>>> 1) Explain the effect of adding KI to
dipyridineiodine(I) nitrate. (Hint. redox) <<<
The O.S. of I in KI is -1, while the O.S. of I in
dipyridineiodine(I) nitrate is +. So the probable resulting redox
reaction is quite easily deduceable - molecular iodine aka diiodine
(O.S. of zero) is produced, along with pyridine (in its protonated
conjugate acid form if a protic solvent is used) and potassium
nitrate (as spectator ions).