Hehheh... Most interesting write up.... Before I start? Can I
know if you're of any related academic studies background on the
topic or you just got your knowledge somewhere somehow? 
Well... I hope this topic interesting to you as much as it interest
me? 
Originally posted by Spear:
Well, I suppose it is fair to say that biological viruses has
managed to survived till so far.
However, to say that extinction is not a possible threat for them
seemed to be over-rating them.
In a way, a parallel example would be something like the equating
of mammals as a never-extincting specimen.
In specific, we could always have a scenario whereby in response to
certain environmental shifts or changes, hundreds of existing
similar viruses may have died, and leaving only one strain of virus
from their common family to survive the ordeal.[b]
That actually brings me to another thought? Remember how the
dinosaurs somehow just seems to have vanished from the surface of
earth? Something happened... Let's say during that period mammals
were all wiped out... (of course, I believe it didn't happened that
way...) Then the cycle somehow 'repeated' itself, but in a
different way..... Would mammals have been considered to face
extinction but come back into existence again...? Hmm... 
Interesting enough to say, as compared to most other species...
Other than the fact that they don't have behaviorial aspect as
mentioned by you to come, they also have a VERY SIMPLE replication
mechanism (no coupling required) and very good doubling rate
usually (the way the population doubles...)... That seems to me
that, UNLESS under a rather environmentally or artificially
constrained system... Their growth rate can easily overwrite their
host's.... Wipe out only seems only possible under very good
measures or unless they're out of host...
[b]
This is a fact that we would probably get to determine in detail,
but this is also a fact that we can never deny.
Given the simple and general knowledge available on viruses, it is
common knowledge that unlike complex organisms which adapts to
changes via evolution thru the behavioural aspect, viruses are
relatively simple organic entites which rely primarily on genes
mutations to survive environmental changes.
While the typical association by the normal layman with the term
'mutation' would often create the impression of a virus being
stronger and tougher, this may not often be true.
In contrast, the mutation process would probably reseamble more to
the occurence of cancer among humans.
This point really interest me... Does mutation process for viruses
take on a totally 'random' process? Or is it somehow more specific?
For it seems to me that mutation process of cancer among animals is
more of an undesirable process that happens just like errors on the
more variable genes and /or due to external stimuli eg.
cancinogenic agents or radiations...? While virus is 'designed' in
such a way that which they prefers to be more variable... (like
their outer coat so that they are not so easily targetted by the
'immunity communitee'.....
Within the mass activity of mutation that goes on within a single
viral strain, the ultimate form could have easily numbered
thousands by the classification of new variants as they spring up
in a horrifryingly fast and uncontrollable sequence.
Though uncontrollable, the process nevertheless does not neccessary
mean that it would be uncontainable.
With respect to this property, a possible manipulation by Man on
this organism may prehaps, be employed more within the zonal of
biological research.
In particular, reseachers and scientists who specialize in genetic
engineering would probably enjoy greater success as they use simple
viruses as their core study to understand the complicating process
of having multiple mutations occuring stimutaneously under a same
set of environmental stress.
Malicious genes or other unstable elements of a stimulated virus
could then be prehaps tagged, studied and preferably
stabilized.
Upon attain the stabilation of easily mutable components in a
virus' strain, the condition virus would thus reseamble a poisonous
snake without its fangs.
One would be able to re-enginneer a 'stabilized' virus according to
specifications (if technologically feasible) to achieve a reformed
slave variant of an original renegade virus.
Dependent on the nature of re-enginneering, such new variants of
slave viruses could be employed in vast and unimaginable
ways.
One may employ them within the human body as an artificially layer
of additional introduced immune system.
The last point is interesting... Employing virus as an artificially
introduced layer of immuno defence system? Care to elaborate on
that?
In industrial usage as catalysts for production purposes.
Or simply just for the simple reason of disarming them to prevent
more harm to our species.
These are of course, only very limited and conventional
possibilities.
In reality, a deeper understanding of the natural mutation cum
evolution activities would possibly just hold the promise to
discover and open up an entire new world and infinate possibilities
for subsequent 'improvements' with lower rates of QC failure.
By then again of course, this picture potrays only the beautiful
side of the story.
With the same knowledge and ambition of viral harvesting, one must
also acknowledged that should a potentially harmless strain be
enginneered by other renegade scientists for the wrong purpose,
then mass hell will break loose.
Hence by the context of reality, there is no choice.
Since we have already discovered on the existence of such
organisms, the quest to dominate and manipulate them can never end
now.
It is, and will forever remain a vicious and bloody cycle.
Either we kill off their harm on us,
Or we let it kill us.
How about mutual existence? Like you've mentioned in your post,
virus can have a vast range of applications too?